Each affiliate is a separate ministry under the oversight and leadership of its own local Calvary Chapel church. Listed below are affiliates that offer full programs (18 credits or more per semester).
National
| Anaheim, CA CC Anaheim |
| Chino, CA CCBC Chino Valley |
| Diamond Bar, CA CCBC Golden Springs |
| Downey, CA CC Downey |
| Santa Barbara, CA Generation Bible College |
| Yucca Valley, CA Calvary Bible Institute |
| Columbus, GA CCBI Georgia |
| Lihue (Kauai), HI CCBC Kauai |
| Indianapolis, IN CCBC Indy |
| Bedford, NH New England School of Ministry |
International
| York, England CCBC York |
| Santiago, Chile (Spanish & English) CCBC Santiago |
| El Secreto, Colombia (Spanish Only) El Secreto Bible College |
| Budapest, Hungary CCBC Europe |
| Italy CCBC Italy |
| Israel CCBI Israel |
| Nairobi, Kenya CCBC Nairobi |
| Ensenada, Mexico CCBC Mexico |
| Kathmandu, Nepal CCBC Nepal |
| Rotorua, New Zealand CCBI New Zealand |
| Dumaguete, Philippines CCBC Dumaguete |
| Mallorca, Spain Mallorca Bible School |
| Okinawa/Tokyo, Japan CCBC Japan |